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» The inverse protein folding problem on 2D and 3D lattices
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DAM
2007
60views more  DAM 2007»
13 years 4 months ago
The inverse protein folding problem on 2D and 3D lattices
Piotr Berman, Bhaskar DasGupta, Dhruv Mubayi, Robe...
CPM
2004
Springer
168views Combinatorics» more  CPM 2004»
13 years 10 months ago
The Protein Sequence Design Problem in Canonical Model on 2D and 3D Lattices
In this paper we investigate the protein sequence design (PSD) problem (also known as the inverse protein folding problem) under the Canonical model 4 on 2D and 3D lattices [12, 25...
Piotr Berman, Bhaskar DasGupta, Dhruv Mubayi, Robe...
BIOCOMP
2008
13 years 6 months ago
Inverse protein folding in 3D hexagonal prism lattice under HP model
Alireza Hadj Khodabakhshi, Ján Manuch, Aras...
BMCBI
2005
152views more  BMCBI 2005»
13 years 4 months ago
An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem
Background: The protein folding problem is a fundamental problems in computational molecular biology and biochemical physics. Various optimisation methods have been applied to for...
Alena Shmygelska, Holger H. Hoos
LPAR
2005
Springer
13 years 10 months ago
A New Constraint Solver for 3D Lattices and Its Application to the Protein Folding Problem
Abstract. The paper describes the formalization and implementation of an efficient constraint programming framework operating on 3D crystal lattices. The framework is motivated an...
Alessandro Dal Palù, Agostino Dovier, Enric...