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» Toward a Systems Biology Software Toolkit
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BMCBI
2007
94views more  BMCBI 2007»
13 years 5 months ago
Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context
Background: Lightweight genome viewer (lwgv) is a web-based tool for visualization of sequence annotations in their chromosomal context. It performs most of the functions of large...
Jeremiah J. Faith, Andrew J. Olson, Timothy S. Gar...
TCAD
2010
118views more  TCAD 2010»
13 years 5 hour ago
Design Tools for Digital Microfluidic Biochips: Toward Functional Diversification and More Than Moore
Abstract--Microfluidics-based biochips enable the precise control of nanoliter volumes of biochemical samples and reagents. They combine electronics with biology, and they integrat...
Krishnendu Chakrabarty, Richard B. Fair, Jun Zeng
ICSM
2007
IEEE
13 years 11 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
OOPSLA
2005
Springer
13 years 10 months ago
Inferring context-free grammars for domain-specific languages
Grammatical inference (or grammar inference) has been applied to various problems in areas such as computational biology, and speech and pattern recognition but its application to...
Faizan Javed
MAGS
2007
100views more  MAGS 2007»
13 years 5 months ago
Engineering agent-mediated integration of bioinformatics analysis tools
Abstract. The availability of massive amounts of biological data, distributed in various data sources, has prompted the development of a wide range of data analysis tools. However,...
Vassilis Koutkias, Andigoni Malousi, Nicos Maglave...