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» Towards Automatic Clustering of Protein Sequences
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CSB
2002
IEEE
109views Bioinformatics» more  CSB 2002»
13 years 10 months ago
Towards Automatic Clustering of Protein Sequences
Analyzing protein sequence data becomes increasingly important recently. Most previous work on this area has mainly focused on building classification models. In this paper, we i...
Jiong Yang, Wei Wang 0010
NAR
2000
111views more  NAR 2000»
13 years 5 months ago
ProtoMap: automatic classification of protein sequences and hierarchy of protein families
The ProtoMap site offers an exhaustive classification of all proteins in the SWISS-PROT database, into groups of related proteins. The classification is based on analysis of all p...
Golan Yona, Nathan Linial, Michal Linial
BIOINFORMATICS
2000
99views more  BIOINFORMATICS 2000»
13 years 5 months ago
GeneRAGE: a robust algorithm for sequence clustering and domain detection
Motivation: Efficient, accurate and automatic clustering of large protein sequence datasets, such as complete proteomes, into families, according to sequence similarity. Detection...
Anton J. Enright, Christos A. Ouzounis
BMCBI
2004
125views more  BMCBI 2004»
13 years 5 months ago
A functional hierarchical organization of the protein sequence space
Background: It is a major challenge of computational biology to provide a comprehensive functional classification of all known proteins. Most existing methods seek recurrent patte...
Noam Kaplan, Moriah Friedlich, Menachem Fromer, Mi...
CSB
2005
IEEE
223views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Automatic Protein Function Annotation through Candidate Ortholog Clusters from Incomplete Genomes
Annotation of protein function often arises in the context of partially complete genomes but is not adequately addressed. We present an annotation method by extracting ortholog cl...
Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muc...