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» Towards a Logical Analysis of Biochemical Pathways
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JELIA
2004
Springer
13 years 10 months ago
Towards a Logical Analysis of Biochemical Pathways
Biochemical pathways or networks are generic representations used to model many different types of complex functional and physical interactions in biological systems. Models based ...
Patrick Doherty, Steve Kertes, Martin Magnusson, A...
ECAI
2004
Springer
13 years 10 months ago
Towards a Logical Analysis of Biochemical Reactions
We provide a logical model of biochemical reactions and show how hypothesis generation using weakest sufficient and strongest necessary conditions may be used to provide addition...
Patrick Doherty, Steve Kertes, Martin Magnusson, A...
ENTCS
2010
103views more  ENTCS 2010»
13 years 2 months ago
A Model and Analysis of the AKAP Scaffold
We study the biochemical processes involved in scaffold-mediated crosstalk between the cAMP and the Raf-1/MEK/ERK pathways. We model the system by a continuous time Markov chain w...
Oana Andrei, Muffy Calder
BMCBI
2007
148views more  BMCBI 2007»
13 years 4 months ago
Toward the automated generation of genome-scale metabolic networks in the SEED
Background: Current methods for the automated generation of genome-scale metabolic networks focus on genome annotation and preliminary biochemical reaction network assembly, but d...
Matthew DeJongh, Kevin Formsma, Paul Boillot, John...