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» Transposable element annotation of the rice genome
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BIOINFORMATICS
2004
86views more  BIOINFORMATICS 2004»
13 years 4 months ago
Transposable element annotation of the rice genome
Motivation: The high content of repetitive sequences in the genomes of many higher eukaryotes renders the task of annotating them computationally intensive. Presently, the only wi...
Nikoleta Juretic, Thomas E. Bureau, Richard M. Bru...
NAR
2008
122views more  NAR 2008»
13 years 5 months ago
The Rice Annotation Project Database (RAP-DB): 2008 update
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated ann...
NAR
2007
85views more  NAR 2007»
13 years 4 months ago
The TIGR Rice Genome Annotation Resource: improvements and new features
In The Institute for Genomic Research Rice Genome Annotation project (http://rice.tigr.org), we have continued to update the rice genome sequence with new data and improve the qua...
Shu Ouyang, Wei Zhu, John A. Hamilton Jr., Haining...
BIB
2007
101views more  BIB 2007»
13 years 5 months ago
Discovering and detecting transposable elements in genome sequences
The contribution of transposable elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated in...
Casey M. Bergman, Hadi Quesneville
BMCBI
2008
111views more  BMCBI 2008»
13 years 5 months ago
VisualRepbase: an interface for the study of occurrences of transposable element families
Background: Repbase is a reference database of eukaryotic repetitive DNA, which includes prototypic sequences of repeats and basic information described in annotations. Repbase al...
Sébastien Tempel, Matthew Jurka, Jerzy Jurk...