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BMCBI
2011
13 years 1 days ago
Tree Pruner: An efficient tool for selecting data from a biased genetic database
Background: Large databases of genetic data are often biased in their representation. Thus, selection of genetic data with desired properties, such as evolutionary representation ...
Mohan Krishnamoorthy, Pragneshkumar Patel, Mira Di...
BIB
2008
141views more  BIB 2008»
13 years 5 months ago
Detecting short tandem repeats from genome data: opening the software black box
Short tandem repeats, specifically microsatellites, are widely used genetic markers, associated with human genetic diseases, and play an important role in various regulatory mecha...
Angelika Merkel, Neil Gemmell
BMCBI
2008
153views more  BMCBI 2008»
13 years 5 months ago
GAPscreener: An automatic tool for screening human genetic association literature in PubMed using the support vector machine tec
Background: Synthesis of data from published human genetic association studies is a critical step in the translation of human genome discoveries into health applications. Although...
Wei Yu, Melinda Clyne, Siobhan M. Dolan, Ajay Yesu...
BMCBI
2011
12 years 8 months ago
PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus ge
Background: Results of phylogenetic analysis are often visualized as phylogenetic trees. Such a tree can typically only include up to a few hundred sequences. When more than a few...
Jiajie Zhang, Amir Madany Mamlouk, Thomas Martinet...
CSDA
2008
128views more  CSDA 2008»
13 years 5 months ago
Classification tree analysis using TARGET
Tree models are valuable tools for predictive modeling and data mining. Traditional tree-growing methodologies such as CART are known to suffer from problems including greediness,...
J. Brian Gray, Guangzhe Fan