Sciweavers

14 search results - page 1 / 3
» Two Algorithms for LCS Consecutive Suffix Alignment
Sort
View
CPM
2004
Springer
86views Combinatorics» more  CPM 2004»
13 years 9 months ago
Two Algorithms for LCS Consecutive Suffix Alignment
The problem of comparing two sequences A and B to determine their similarity is one of the fundamental problems in pattern matching. A challenging, basic variation of the sequence...
Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson
BMCBI
2010
103views more  BMCBI 2010»
13 years 5 months ago
MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of r
Background: Sequence alignment is one of the most important techniques to analyze biological systems. It is also true that the alignment is not complete and we have to develop it ...
Toshihide Hara, Keiko Sato, Masanori Ohya
CSR
2006
Springer
13 years 9 months ago
All Semi-local Longest Common Subsequences in Subquadratic Time
For two strings a, b of lengths m, n respectively, the longest common subsequence (LCS) problem consists in comparing a and b by computing the length of their LCS. In this paper, w...
Alexandre Tiskin
JDA
2008
72views more  JDA 2008»
13 years 5 months ago
Semi-local longest common subsequences in subquadratic time
For two strings a, b of lengths m, n respectively, the longest common subsequence (LCS) problem consists in comparing a and b by computing the length of their LCS. In this paper, ...
Alexander Tiskin
BIBM
2009
IEEE
118views Bioinformatics» more  BIBM 2009»
13 years 9 months ago
Inexact Local Alignment Search over Suffix Arrays
We describe an algorithm for finding approximate seeds for DNA homology searches. In contrast to previous algorithms that use exact or spaced seeds, our approximate seeds may conta...
Mohammadreza Ghodsi, Mihai Pop