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BMCBI
2011
12 years 11 months ago
Detection of viral sequence fragments of HIV-1 subfamilies yet unknown
Background: Methods of determining whether or not any particular HIV-1 sequence stems - completely or in part - from some unknown HIV-1 subtype are important for the design of vac...
Thomas Unterthiner, Anne-Kathrin Schultz, Jan Bull...
RECOMB
2009
Springer
13 years 11 months ago
Reconstructing Histories of Complex Gene Clusters on a Phylogeny
Abstract. Clusters of genes that have evolved by repeated segmental duplication present difficult challenges throughout genomic analysis, from sequence assembly to functional analy...
Tomás Vinar, Brona Brejová, Giltae S...
IJCAI
2007
13 years 6 months ago
Metric Properties of Structured Data Visualizations through Generative Probabilistic Modeling
Recently, generative probabilistic modeling principles were extended to visualization of structured data types, such as sequences. The models are formulated as constrained mixture...
Peter Tino, Nikolaos Gianniotis
ICASSP
2009
IEEE
13 years 11 months ago
On the phonetic information in ultrasonic microphone signals
We study the phonetic information in the signal from an ultrasonic “microphone”, a device that emits an ultrasonic wave toward a speaker and receives the reflected, Doppler-s...
Karen Livescu, Bo Zhu, James R. Glass
BMCBI
2010
135views more  BMCBI 2010»
13 years 4 months ago
A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis
Background: Accurate classification into genotypes is critical in understanding evolution of divergent viruses. Here we report a new approach, MuLDAS, which classifies a query seq...
Ji Woong Kim, Yongju Ahn, Kichan Lee, Sung-Hee Par...