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    BMEI
    2008
    IEEE
    145views Biomedical Imaging» more  BMEI 2008»
    Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks
    13 years 11 months ago
    Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks
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    Inferring transcriptional regulatory networks from geneexpression data remains a challenging problem, in part because of the noisy nature of the data and the lack of strong networ...
    Xiuwei Zhang, Maryam Zaheri, Bernard M. E. Moret
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    WABI
    2009
    Springer
    128views Bioinformatics» more  WABI 2009»
    Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models
    13 years 11 months ago
    Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models
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    Abstract. Computational inference of transcriptional regulatory networks remains a challenging problem, in part due to the lack of strong network models. In this paper we present e...
    Xiuwei Zhang, Bernard M. E. Moret
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    BMCBI
    2008
    166views more  BMCBI 2008»
    Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual informa
    13 years 5 months ago
    Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual informa
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    Background: Probability based statistical learning methods such as mutual information and Bayesian networks have emerged as a major category of tools for reverse engineering mecha...
    Weijun Luo, Kurt D. Hankenson, Peter J. Woolf
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    BMCBI
    2011
    254views Artificial Intelligence» more  BMCBI 2011»
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
    12 years 8 months ago
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
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    Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
    Yao Fu, Laura R. Jarboe, Julie A. Dickerson
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    BMCBI
    2008
    202views more  BMCBI 2008»
    Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
    13 years 5 months ago
    Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
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    Background: Integrating data from multiple global assays and curated databases is essential to understand the spatiotemporal interactions within cells. Different experiments measu...
    Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Ro...
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