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BMCBI
2008
131views more  BMCBI 2008»
13 years 4 months ago
Major copy proportion analysis of tumor samples using SNP arrays
Background: Single nucleotide polymorphisms (SNPs) are the most common genetic variations in the human genome and are useful as genomic markers. Oligonucleotide SNP microarrays ha...
Cheng Li, Rameen Beroukhim, Barbara A. Weir, Wendy...
BMCBI
2007
134views more  BMCBI 2007»
13 years 4 months ago
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
Background: Joint alignment and secondary structure prediction of two RNA sequences can significantly improve the accuracy of the structural predictions. Methods addressing this p...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
BMCBI
2008
102views more  BMCBI 2008»
13 years 4 months ago
Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs
Background: Ornithine decarboxylase antizymes are proteins which negatively regulate cellular polyamine levels via their affects on polyamine synthesis and cellular uptake. In vir...
Michaël Bekaert, Ivaylo P. Ivanov, John F. At...
WABI
2010
Springer
170views Bioinformatics» more  WABI 2010»
13 years 3 months ago
Haplotypes versus Genotypes on Pedigrees
Abstract. Genome sequencing will soon produce haplotype data for individuals. For pedigrees of related individuals, sequencing appears to be an attractive alternative to genotyping...
Bonnie Kirkpatrick
JSAC
2008
254views more  JSAC 2008»
13 years 4 months ago
Cross-Layer Based Opportunistic MAC Protocols for QoS Provisionings Over Cognitive Radio Wireless Networks
We propose the cross-layer based opportunistic multi-channel medium access control (MAC) protocols, which integrate the spectrum sensing at physical (PHY) layer with the packet sch...
Hang Su, Xi Zhang