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» Variable-length Intervals in Homology Search
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APBC
2004
13 years 6 months ago
Variable-length Intervals in Homology Search
Fast, accurate, and scalable search techniques for homology searching of large genomic collections are becoming an increasingly important requirement as genomic sequence collectio...
Abhijit Chattaraj, Hugh E. Williams
BMCBI
2008
75views more  BMCBI 2008»
13 years 5 months ago
Re-searcher: a system for recurrent detection of homologous protein sequences
Background: Sequence searches are routinely employed to detect and annotate related proteins. However, a rapid growth of databases necessitates a frequent repetition of sequence s...
Valdemaras Repsys, Mindaugas Margelevicius, Ceslov...
WABI
2007
Springer
102views Bioinformatics» more  WABI 2007»
13 years 11 months ago
Homology Search with Fragmented Nucleic Acid Sequence Patterns
The comprehensive annotation of non-coding RNAs in newly sequenced genomes is still a largely unsolved problem because many functional RNAs exhibit not only poorly conserved sequen...
Axel Mosig, Julian J.-L. Chen, Peter F. Stadler
SODA
2010
ACM
213views Algorithms» more  SODA 2010»
14 years 2 months ago
Regular Expression Matching with Multi-Strings
Regular expression matching is a key task (and often computational bottleneck) in a variety of software tools and applications. For instance, the standard grep and sed utilities, ...
Philip Bille, Mikkel Thorup
EC
2006
163views ECommerce» more  EC 2006»
13 years 4 months ago
An Extension of Geiringer's Theorem for a Wide Class of Evolutionary Search Algorithms
The frequency with which various elements of the search space of a given evolutionary algorithm are sampled is affected by the family of recombination (reproduction) operators. Th...
Boris Mitavskiy, Jonathan E. Rowe