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» Vector Algorithms for Approximate String Matching
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CPM
2005
Springer
206views Combinatorics» more  CPM 2005»
13 years 10 months ago
A Fast Algorithm for Approximate String Matching on Gene Sequences
Abstract. Approximate string matching is a fundamental and challenging problem in computer science, for which a fast algorithm is highly demanded in many applications including tex...
Zheng Liu, Xin Chen, James Borneman, Tao Jiang
IPPS
2006
IEEE
13 years 11 months ago
Implementation of a programmable array processor architecture for approximate string matching algorithms on FPGAs
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
SPIRE
2005
Springer
13 years 10 months ago
Restricted Transposition Invariant Approximate String Matching Under Edit Distance
Let A and B be strings with lengths m and n, respectively, over a finite integer alphabet. Two classic string mathing problems are computing the edit distance between A and B, and...
Heikki Hyyrö
ASAP
2004
IEEE
185views Hardware» more  ASAP 2004»
13 years 8 months ago
Families of FPGA-Based Algorithms for Approximate String Matching
Dynamic programming for approximate string matching is a large family of different algorithms, which vary significantly in purpose, complexity, and hardware utilization. Many impl...
Tom Van Court, Martin C. Herbordt
SODA
1998
ACM
157views Algorithms» more  SODA 1998»
13 years 6 months ago
Approximate String Matching: A Simpler Faster Algorithm
We give two algorithms for finding all approximate matches of a pattern in a text, where the edit distance between the pattern and the matching text substring is at most k. The fir...
Richard Cole, Ramesh Hariharan