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CIBCB
2008
IEEE
13 years 11 months ago
Very large scale ReliefF for genome-wide association analysis
— The genetic causes of many monogenic diseases have already been discovered. However, most common diseases are actually the result of complex nonlinear interactions between mult...
Margaret J. Eppstein, Paul Haake
BMCBI
2008
195views more  BMCBI 2008»
13 years 5 months ago
Goldsurfer2 (Gs2): A comprehensive tool for the analysis and visualization of genome wide association studies
Background: Genome wide association (GWA) studies are now being widely undertaken aiming to find the link between genetic variations and common diseases. Ideally, a well-powered G...
Fredrik Pettersson, Andrew P. Morris, Michael R. B...
RECOMB
2009
Springer
14 years 5 months ago
COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association Study
The availability of high density single nucleotide polymorphisms (SNPs) data has made genome-wide association study computationally challenging. Twolocus epistasis (gene-gene inter...
Xiang Zhang, Feng Pan, Yuying Xie, Fei Zou, Wei Wa...
BMCBI
2008
113views more  BMCBI 2008»
13 years 5 months ago
SNPFile - A software library and file format for large scale association mapping and population genetics studies
Background: High-throughput genotyping technology has enabled cost effective typing of thousands of individuals in hundred of thousands of markers for use in genome wide studies. ...
Jesper Nielsen, Thomas Mailund
KDD
2012
ACM
271views Data Mining» more  KDD 2012»
11 years 7 months ago
GigaTensor: scaling tensor analysis up by 100 times - algorithms and discoveries
Many data are modeled as tensors, or multi dimensional arrays. Examples include the predicates (subject, verb, object) in knowledge bases, hyperlinks and anchor texts in the Web g...
U. Kang, Evangelos E. Papalexakis, Abhay Harpale, ...