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BMCBI
2007
162views more  BMCBI 2007»
13 years 6 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee
EDBT
2012
ACM
257views Database» more  EDBT 2012»
11 years 8 months ago
Indexing and mining topological patterns for drug discovery
Increased availability of large repositories of chemical compounds has created new challenges and opportunities for the application of data-mining and indexing techniques to probl...
Sayan Ranu, Ambuj K. Singh
BMCBI
2010
193views more  BMCBI 2010»
13 years 6 months ago
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
Background: Mass spectrometry (MS) coupled with online separation methods is commonly applied for differential and quantitative profiling of biological samples in metabolomic as w...
Tomás Pluskal, Sandra Castillo, Alejandro V...
DIS
2004
Springer
13 years 11 months ago
Predictive Graph Mining
Abstract. Graph mining approaches are extremely popular and effective in molecular databases. The vast majority of these approaches first derive interesting, i.e. frequent, patte...
Andreas Karwath, Luc De Raedt
CSB
2005
IEEE
120views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Chemical Structure-Activity Relationship Visualization Using Structure Activity Maps
This study shows an effective way to explore and visualize the structure-activity relationships (SARs) of flavonoids with antioxidant activity using structure- activity maps (SAMs...
Weiguo Fan, Xin Lin, Yu-Wei Hsieh, Johnnie W. Bake...