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GD
2003
Springer
13 years 9 months ago
Visualizing Related Metabolic Pathways in Two and a Half Dimensions
We propose a method for visualizing a set of related metabolic pathways using 21 2 D graph drawing. Interdependent, twodimensional layouts of each pathway are stacked on top of eac...
Ulrik Brandes, Tim Dwyer, Falk Schreiber
WABI
2009
Springer
155views Bioinformatics» more  WABI 2009»
13 years 11 months ago
A Markov Classification Model for Metabolic Pathways
Background: This paper considers the problem of identifying pathways through metabolic networks that relate to a specific biological response. Our proposed model, HME3M, first ide...
Timothy Hancock, Hiroshi Mamitsuka
APVIS
2004
13 years 6 months ago
Optimal Leaf Ordering for Two and a Half Dimensional Phylogenetic Tree Visualisation
Two and a half dimensional graph visualisation is the stacking of a set of related graphs into the third dimension to support visual comparison. A new aesthetic criterion is intro...
Tim Dwyer, Falk Schreiber
GD
2005
Springer
13 years 10 months ago
Drawing Clustered Graphs in Three Dimensions
Clustered graph is a very useful model for drawing large and complex networks. This paper presents a new method for drawing clustered graphs in three dimensions. The method uses a ...
Joshua Wing Kei Ho, Seok-Hee Hong
BMCBI
2004
150views more  BMCBI 2004»
13 years 4 months ago
Graph-based iterative Group Analysis enhances microarray interpretation
Background: One of the most time-consuming tasks after performing a gene expression experiment is the biological interpretation of the results by identifying physiologically impor...
Rainer Breitling, Anna Amtmann, Pawel Herzyk