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» apTreeshape: statistical analysis of phylogenetic tree shape
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STOC
2006
ACM
129views Algorithms» more  STOC 2006»
14 years 5 months ago
Optimal phylogenetic reconstruction
One of the major tasks of evolutionary biology is the reconstruction of phylogenetic trees from molecular data. The evolutionary model is given by a Markov chain on the true evolu...
Constantinos Daskalakis, Elchanan Mossel, Sé...
MIR
2010
ACM
179views Multimedia» more  MIR 2010»
13 years 3 months ago
Speculation on the generality of the backward stepwise view of PCA
A novel backwards viewpoint of Principal Component Analysis is proposed. In a wide variety of cases, that fall into the area of Object Oriented Data Analysis, this viewpoint is se...
J. S. Marron, Sungkyu Jung, Ian L. Dryden
NAR
2006
120views more  NAR 2006»
13 years 5 months ago
TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
Phylogenetic analysis and examination of protein domains allow accurate genome annotation and are invaluable to study proteins and protein complex evolution. However, two sequence...
Blaise T. F. Alako, Daphne Rainey, Harm Nijveen, J...
BMCBI
2011
13 years 9 days ago
N-gram analysis of 970 microbial organisms reveals presence of biological language models
Background: It has been suggested previously that genome and proteome sequences show characteristics typical of natural-language texts such as “signature-style” word usage ind...
Hatice U. Osmanbeyoglu, Madhavi Ganapathiraju
VISUALIZATION
2005
IEEE
13 years 11 months ago
Evolutionary Morphing
We introduce a technique to visualize the gradual evolutionary change of the shapes of living things as a morph between known three-dimensional shapes. Given geometric computer mo...
David F. Wiley, Nina Amenta, Dan A. Alcantara, Deb...