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BIBM
2009
IEEE
183views Bioinformatics» more  BIBM 2009»
13 years 10 months ago
Modeling Protein Interaction Networks with Answer Set Programming
—In this paper we propose the use of answer set programming (ASP) to model protein interaction networks. We argue that this declarative formalism rivals the popular boolean netwo...
Timur Fayruzov, Martine De Cock, Chris Cornelis, D...
BIBM
2009
IEEE
206views Bioinformatics» more  BIBM 2009»
14 years 5 days ago
ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties
—We present a new algorithm, ChemAlign, that uses physicochemical properties and secondary structure elements to create biologically relevant multiple sequence alignments (MSAs)....
Hyrum Carroll, Mark J. Clement, Quinn Snell, David...
BIBM
2009
IEEE
164views Bioinformatics» more  BIBM 2009»
13 years 10 months ago
Differential Predictive Modeling for Racial Disparities in Breast Cancer
The primary objective of disparities research is to model the differences across multiple groups and identify the groups that behave significantly different from each other. Indep...
Indranil Palit, Chandan K. Reddy, Kendra L. Schwar...
BIBM
2009
IEEE
192views Bioinformatics» more  BIBM 2009»
14 years 5 days ago
A Multi-task Feature Selection Filter for Microarray Classification
A major challenge in microarray classification and biomarker discovery is dealing with small-sample high-dimensional data where the number of genes used as features is typically o...
Liang Lan, Slobodan Vucetic
BIBM
2009
IEEE
190views Bioinformatics» more  BIBM 2009»
13 years 3 months ago
A Fast, Semi-automatic Brain Structure Segmentation Algorithm for Magnetic Resonance Imaging
Abstract--Medical image segmentation has become an essential technique in clinical and research-oriented applications. Because manual segmentation methods are tedious, and fully au...
Kevin Karsch, Qing He, Ye Duan