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CIBCB
2005
IEEE
13 years 11 months ago
Heuristic Algorithm for Computing Reversal Distance with MultiGene Families via Binary Integer Programming
— Hannenhalli and Pevzner developed the first polynomial-time algorithm for the combinatorial problem of sorting of signed genomic data. Their algorithm solves the minimum numbe...
Jakkarin Suksawatchon, Chidchanok Lursinsap, Mikae...
CIBCB
2005
IEEE
13 years 11 months ago
Feature Selection for Microarray Data Using Least Squares SVM and Particle Swarm Optimization
Feature selection is an important preprocessing technique for many pattern recognition problems. When the number of features is very large while the number of samples is relatively...
E. Ke Tang, Ponnuthurai N. Suganthan, Xin Yao
CIBCB
2005
IEEE
13 years 11 months ago
Functional Distances for Genes Based on GO Feature Maps and their Application to Clustering
— With the invention of high throughput methods, researchers are capable of producing large amounts of biological data. During the analysis of such data, the need for a functiona...
Nora Speer, Holger Fröhlich, Christian Spieth...
CIBCB
2005
IEEE
13 years 11 months ago
Predicting Peroxisomal Proteins
— PTS1 proteins are peroxisomal matrix proteins that have a well conserved targeting motif at the C-terminal end. However, this motif is present in many non peroxisomal proteins ...
John Hawkins, Mikael Bodén
CIBCB
2005
IEEE
13 years 11 months ago
The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space
— Part of the challenge of modeling protein sequences is their discrete nature. Many of the most powerful statistical and learning techniques are applicable to points in a Euclid...
Eleazar Eskin, Sagi Snir