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CISIS
2010
IEEE
14 years 6 days ago
Logic-Based Steady-State Analysis and Revision of Metabolic Networks with Inhibition
—This paper presents a qualitative logic-based method for the steady-state analysis and revision of metabolic networks with inhibition. The approach is able to automatically revi...
Oliver Ray, Ken E. Whelan, Ross D. King
CISIS
2010
IEEE
14 years 6 days ago
A Multidimensional Array Slicing DSL for Stream Programming
—Stream languages offer a simple multi-core programming model and achieve good performance. Yet expressing data rearrangement patterns (like a matrix block decomposition) in thes...
Pablo de Oliveira Castro, Stéphane Louise, ...
CISIS
2010
IEEE
14 years 6 days ago
Gene Ontology Rewritten for Computing Gene Functional Similarity
Abstract—Discovery biological organisation of the cell in modules network is a challenging task. Currently, approaches based on a controlled vocabulary, as Gene Ontology, to iden...
Alessia Visconti, Francesca Cordero, Marco Botta, ...
CISIS
2010
IEEE
13 years 3 months ago
Scalable Grid Resource Trading with Greedy Heuristics
As Grid infrastructures become more widely used by the academic and commercial world, the problem of resource allocation increases in complexity. Resource trading markets are one m...
Georg Buss, Kevin Lee, Daniel Veit
CISIS
2010
IEEE
13 years 10 months ago
A Parallel Programming Framework for Multi-core DNA Sequence Alignment
—A new parallel programming framework for DNA sequence alignment in homogeneous multi-core processor architectures is proposed. Contrasting with traditional coarse-grained parall...
Tiago Jose Barreiros Martins de Almeida, Nuno Fili...