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DILS
2006
Springer
13 years 8 months ago
On Querying OBO Ontologies Using a DAG Pattern Query Language
The Open Biomedical Ontologies (OBO) is a consortium that serves as a repository of ontologies that are structured like directed acyclic graphs. In this paper we present a language...
Amarnath Gupta, Simone Santini
DILS
2006
Springer
13 years 8 months ago
The Distributed Annotation System for Integration of Biological Data
The Distributed Annotation System (DAS) is a protocol for sharing of biological data which allows for dynamical data integration. It has become widely used in both the genome and p...
Andreas Prlic, Ewan Birney, Tony Cox, Thomas A. Do...
DILS
2006
Springer
13 years 8 months ago
A Method for Similarity-Based Grouping of Biological Data
Similarity-based grouping of data entries in one or more data sources is a task underlying many different data management tasks, such as, structuring search results, removal of red...
Vaida Jakoniene, David Rundqvist, Patrick Lambrix
DILS
2006
Springer
13 years 8 months ago
Link Discovery in Graphs Derived from Biological Databases
Public biological databases contain vast amounts of rich data that can also be used to create and evaluate new biological hypothesis. We propose a method for link discovery in biol...
Petteri Sevon, Lauri Eronen, Petteri Hintsanen, Ki...
DILS
2006
Springer
13 years 8 months ago
Towards a Model of Provenance and User Views in Scientific Workflows
Scientific experiments are becoming increasingly large and complex, with a commensurate increase in the amount and complexity of data generated. Data, both intermediate and final r...
Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davi...