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IWANN
2009
Springer
13 years 12 months ago
ZARAMIT: A System for the Evolutionary Study of Human Mitochondrial DNA
Abstract. ZARAMIT is an information system capable of fully automated phylogeny reconstruction. Methods have been tailored to mitochondrial DNA sequences, with focus on subproblem ...
Roberto Blanco, Elvira Mayordomo
WABI
2009
Springer
142views Bioinformatics» more  WABI 2009»
13 years 12 months ago
Back-Translation for Discovering Distant Protein Homologies
Background: Frameshift mutations in protein-coding DNA sequences produce a drastic change in the resulting protein sequence, which prevents classic protein alignment methods from ...
Marta Gîrdea, Laurent Noé, Gregory Ku...
CPM
2009
Springer
207views Combinatorics» more  CPM 2009»
13 years 9 months ago
An Efficient Matching Algorithm for Encoded DNA Sequences and Binary Strings
We present a new efficient algorithm for exact matching in encoded DNA sequences and on binary strings. Our algorithm combines a multi-pattern version of the Bndm algorithm and a s...
Simone Faro, Thierry Lecroq
IBPRIA
2009
Springer
13 years 10 months ago
Variable Order Finite-Context Models in DNA Sequence Coding
Abstract. Being an essential key in biological research, the DNA sequences are often shared between researchers and digitally stored for future use. As these sequences grow in volu...
Daniel A. Martins, António J. R. Neves, Arm...
COCOA
2009
Springer
13 years 10 months ago
DNA Library Screening, Pooling Design and Unitary Spaces
Abstract. Pooling design is an important research topic in bioinformatics due to its wide applications in molecular biology, especially DNA library screening. In this paper, with u...
Suogang Gao, Zengti Li, Jiangchen Yu, Xiaofeng Gao...