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    JCB
    2007
    99views more  JCB 2007»
    Duplication and Inversion History of a Tandemly Repeated Genes Family
    13 years 5 months ago
    Duplication and Inversion History of a Tandemly Repeated Genes Family
    Download  www.iro.umontreal.ca
    Given a phylogenetic tree for a family of tandemly repeated genes and their signed order on the chromosome, we aim to find the minimum number of inversions compatible with an evo...
    Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, ...
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    JCB
    2008
    144views more  JCB 2008»
    Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes
    13 years 5 months ago
    Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes
    Download  www.cse.sc.edu
    Multi-break rearrangements break a genome into multiple fragments and further glue them together in a new order. While 2-break rearrangements represent standard reversals, fusions...
    Max A. Alekseyev
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    JCB
    2007
    108views more  JCB 2007»
    A Dynamic Programming Approach for Finding Common Patterns in RNAs
    13 years 5 months ago
    A Dynamic Programming Approach for Finding Common Patterns in RNAs
    Download  www.bioinf.uni-freiburg.de
    We developed a dynamic programming approach of computing common sequence structure patterns among two RNAs given their primary sequences and their secondary structures. Common pat...
    Sven Siebert, Rolf Backofen
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    JCB
    2007
    97views more  JCB 2007»
    Parsing Nucleic Acid Pseudoknotted Secondary Structure: Algorithm and Applications
    13 years 5 months ago
    Parsing Nucleic Acid Pseudoknotted Secondary Structure: Algorithm and Applications
    Download  www.cs.ubc.ca
    Accurate prediction of pseudoknotted nucleic acid secondary structure is an important computational challenge. Prediction algorithms based on dynamic programming aim to find a st...
    Baharak Rastegari, Anne Condon
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    JCB
    2007
    92views more  JCB 2007»
    Neighbor Joining Algorithms for Inferring Phylogenies via LCA Distances
    13 years 5 months ago
    Neighbor Joining Algorithms for Inferring Phylogenies via LCA Distances
    Download  www.cs.technion.ac.il
    Reconstructing phylogenetic trees efficiently and accurately from distance estimates is an ongoing challenge in computational biology from both practical and theoretical consider...
    Ilan Gronau, Shlomo Moran
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