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RECOMB
2010
Springer
13 years 11 months ago
Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs
Abstract. In this paper, we focus on finding complex annotation patterns representing novel and interesting hypotheses from gene annotation data. We define a generalization of th...
Barna Saha, Allison Hoch, Samir Khuller, Louiqa Ra...
RECOMB
2010
Springer
13 years 6 months ago
Leveraging Sequence Classification by Taxonomy-Based Multitask Learning
In this work we consider an inference task that biologists are very good at: deciphering biological processes by bringing together knowledge that has been obtained by experiments u...
Christian Widmer, Jose Leiva, Yasemin Altun, Gunna...
RECOMB
2010
Springer
13 years 6 months ago
naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing
Immense amounts of raw instrument data (i.e., images of fluorescence) are currently being generated using ultra high-throughput sequencing platforms. An important computational cha...
Wei-Chun Kao, Yun S. Song
SPIRE
2010
Springer
13 years 3 months ago
Fast Bit-Parallel Matching for Network and Regular Expressions
Abstract. In this paper, we extend the SHIFT-AND approach by BaezaYates and Gonnet (CACM 35(10), 1992) to the matching problem for network expressions, which are regular expression...
Yusaku Kaneta, Shin-ichi Minato, Hiroki Arimura