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WABI
2007
Springer
157views Bioinformatics» more  WABI 2007»
13 years 11 months ago
Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation
Abstract. Parameter estimation of large bio-pathway models is an important and difficult problem. To reduce the prohibitive computational cost, one approach is to decompose a large...
Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S...
WABI
2007
Springer
13 years 11 months ago
A Graph Clustering Approach to Weak Motif Recognition
The aim of the motif recognition problem is to detect a set of mutually similar subsequences within a collection of biological sequences. The weak motif recognition problem on DNA ...
Christina Boucher, Daniel G. Brown, Paul Church
WABI
2007
Springer
121views Bioinformatics» more  WABI 2007»
13 years 11 months ago
Seeded Tree Alignment and Planar Tanglegram Layout
The optimal transformation of one tree into another by means of elementary edit operations is an important algorithmic problem that has several interesting applications to computat...
Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabr...
WABI
2007
Springer
13 years 11 months ago
Bringing Folding Pathways into Strand Pairing Prediction
Abstract. The topology of β-sheets is defined by the pattern of hydrogenbonded strand pairing. Therefore, predicting hydrogen bonded strand partners is a fundamental step towards...
Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka
WABI
2007
Springer
13 years 11 months ago
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking
Christopher James Langmead⋆ and Sumit Kumar Jha Department of Computer Science, Carnegie Mellon University We present a novel approach for predicting protein folding kinetics us...
Christopher James Langmead, Sumit Kumar Jha