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WABI
2009
Springer
129views Bioinformatics» more  WABI 2009»
13 years 12 months ago
biRNA: Fast RNA-RNA Binding Sites Prediction
We present biRNA, a novel algorithm for prediction of binding sites between two RNAs based on minimization of binding free energy. Similar to RNAup approach [30], we assume the bin...
Hamidreza Chitsaz, Rolf Backofen, Süleyman Ce...
WABI
2009
Springer
124views Bioinformatics» more  WABI 2009»
13 years 12 months ago
Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction
Background: Functionally related genes tend to be correlated in their expression patterns across multiple conditions and/or tissue-types. Thus co-expression networks are often use...
Matthew Hansen, Logan Everett, Larry Singh, Sridha...
WABI
2009
Springer
127views Bioinformatics» more  WABI 2009»
13 years 12 months ago
Constructing Majority-Rule Supertrees
Background: Supertree methods combine the phylogenetic information from multiple partially-overlapping trees into a larger phylogenetic tree called a supertree. Several supertree ...
Jianrong Dong, David Fernández-Baca, Fred R...
WABI
2009
Springer
132views Bioinformatics» more  WABI 2009»
13 years 12 months ago
mpscan: Fast Localisation of Multiple Reads in Genomes
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...
WABI
2009
Springer
102views Bioinformatics» more  WABI 2009»
13 years 12 months ago
A Tree Based Method for the Rapid Screening of Chemical Fingerprints
Background: The fingerprint of a molecule is a bitstring based on its structure, constructed such that structurally similar molecules will have similar fingerprints. Molecular fin...
Thomas G. Kristensen, Jesper Nielsen, Christian N....