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    APBC
    2004
    125views Bioinformatics» more  APBC 2004»
    A Dihedral Angle Database of Short Sub-sequences for Protein Structure Prediction
    13 years 6 months ago
    A Dihedral Angle Database of Short Sub-sequences for Protein Structure Prediction
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    Protein structure prediction is considered to be the holy grail of bioinformatics. Ab initio and homology modelling are two important groups of methods used in protein structure p...
    Saravanan Dayalan, Savitri Bevinakoppa, Heiko Schr...
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    APBC
    2004
    107views Bioinformatics» more  APBC 2004»
    An Empirical Bayes Adjustment to Multiple p-values for the Detection of Differentially Expressed Genes in Microarray Experiments
    13 years 6 months ago
    An Empirical Bayes Adjustment to Multiple p-values for the Detection of Differentially Expressed Genes in Microarray Experiments
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    In recent microarray experiments thousands of gene expressions are simultaneously tested in comparing samples (e.g., tissue types or experimental conditions). Application of a sta...
    Somnath Datta, Susmita Datta
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    APBC
    2004
    108views Bioinformatics» more  APBC 2004»
    Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences
    13 years 6 months ago
    Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences
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    In this study we have designed a novel algorithm for searching common segments in multiple DNA sequences. To improve efficiency in pattern searching, combination of hashing encodi...
    Tun-Wen Pai, Margaret Dah-Tsyr Chang, Jia-Han Chu,...
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    APBC
    2004
    138views Bioinformatics» more  APBC 2004»
    Whole-Genome Functional Classification of Genes by Latent Semantic Analysis on Microarray Data
    13 years 6 months ago
    Whole-Genome Functional Classification of Genes by Latent Semantic Analysis on Microarray Data
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    Quantitative simultaneous monitoring of the expression levels of thousands of genes under various experimental conditions is now possible using microarray experiments. The resulti...
    See-Kiong Ng, Zexuan Zhu, Yew-Soon Ong
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    APBC
    2004
    74views Bioinformatics» more  APBC 2004»
    Classification Comparison of Prediction of Solvent Accessibility From Protein Sequences
    13 years 6 months ago
    Classification Comparison of Prediction of Solvent Accessibility From Protein Sequences
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    Huiling Chen, Huan-Xiang Zhou, Xiaohua Hu, Illhoi ...
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    APBC
    2004
    122views Bioinformatics» more  APBC 2004»
    Integrating Biopathway Databases for Large-scale Modeling and Simulation
    13 years 6 months ago
    Integrating Biopathway Databases for Large-scale Modeling and Simulation
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    Biopathway databases have been developed, such as KEGG and EcoCyc, that compile interaction structures of biopathways together with biological annotations. However, these biopathw...
    Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Sato...
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    APBC
    2004
    122views Bioinformatics» more  APBC 2004»
    Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type 1
    13 years 6 months ago
    Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type 1
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    Mutation in HIV-1 is extremely rapid, a consequence of a low-fidelity viral reverse transcription process. The envelope gene has been shown to accumulate substitutions at a rate o...
    Peter L. Meintjes, Allen G. Rodrigo
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    APBC
    2004
    70views Bioinformatics» more  APBC 2004»
    Variable-length Intervals in Homology Search
    13 years 6 months ago
    Variable-length Intervals in Homology Search
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    Fast, accurate, and scalable search techniques for homology searching of large genomic collections are becoming an increasingly important requirement as genomic sequence collectio...
    Abhijit Chattaraj, Hugh E. Williams
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    APBC
    2004
    132views Bioinformatics» more  APBC 2004»
    Identifying Character Non-Independence in Phylogenetic Data Using Data Mining Techniques
    13 years 6 months ago
    Identifying Character Non-Independence in Phylogenetic Data Using Data Mining Techniques
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    Undiscovered relationships in a data set may confound analyses, particularly those that assume data independence. Such problems occur when characters used for phylogenetic analyse...
    Anne M. Maglia, Jennifer L. Leopold, Venkat Ram Gh...
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    APBC
    2004
    105views Bioinformatics» more  APBC 2004»
    Phylogenetic Trees: An Information Visualisation Perspective
    13 years 6 months ago
    Phylogenetic Trees: An Information Visualisation Perspective
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    Savrina F. Carrizo
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