Biological Sequence Analysis

Wepresent the prototype of a software system, cMledGeneQuiz,for large-scale biological sequence analysis. The system was designed to meet the needs that arise in computational seq...

Michael Scharf, Reinhard Schneider, Georg Casari, ...

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10

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AINA
2006
IEEE

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Accelerating the HMMER Sequence Analysis Suite Using Conventional Processors

13 years 11 months ago

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Due to the ever-increasing size of sequence databases it has become clear that faster techniques must be employed to effectively perform biological sequence analysis in a reasonab...

John Paul Walters, Bashar Qudah, Vipin Chaudhary

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9

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KDD
2001
ACM

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Maximum entropy methods for biological sequence modeling

14 years 5 months ago

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Many of the same modeling methods used in natural languages, speci cally Markov models and HMM's, have also been applied to biological sequence analysis. In recent years, nat...

Eugen C. Buehler, Lyle H. Ungar

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23

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ICLP
2009
Springer

100views Automated Reasoning» more ICLP 2009»

Logic-Statistic Models with Constraints for Biological Sequence Analysis

14 years 5 months ago