Sciweavers

AMAI
2007
Springer
13 years 5 months ago
Reasoning about non-immediate triggers in biological networks
Modeling molecular interactions in biological networks is important from various perspectives such as predicting side effects of drugs, explaining unusual cellular behavior and dr...
Nam Tran, Chitta Baral
CSB
2004
IEEE
154views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Multi-Knockout Genetic Network Analysis: The Rad6 Example
A novel and rigorous Multi-perturbation Shapley Value Analysis (MSA) method has been recently presented [12]. The method addresses the challenge of defining and calculating the fu...
Alon Kaufman, Martin Kupiec, Eytan Ruppin
HOTOS
1997
IEEE
13 years 9 months ago
Building Diverse Computer Systems
Diversity is an important source of robustness in biological systems. Computers, by contrast, are notable for their lack of diversity. Although homogeneous systems have many advan...
Stephanie Forrest, Anil Somayaji, David H. Ackley
ECAL
2003
Springer
13 years 10 months ago
A Universal Framework for Self-Replication
Abstract. Self-replication is a fundamental property of many interesting physical, formal and biological systems, such as crystals, waves, automata, and especially forms of natural...
Bryant Adams, Hod Lipson
VMCAI
2004
Springer
13 years 10 months ago
A Grand Challenge for Computing: Towards Full Reactive Modeling of a Multi-cellular Animal
Biological systems can be modeled beneficially as reactive systems, using languages and tools developed for the construction of man-made systems. Our long-term aim is to model a f...
David Harel
SAS
2004
Springer
13 years 10 months ago
Spatial Analysis of BioAmbients
Abstract. Programming language technology can contribute to the development and understanding of Systems Biology by providing formal calculi for specifying and analysing the dynami...
Hanne Riis Nielson, Flemming Nielson, Henrik Pileg...
CMSB
2004
Springer
13 years 10 months ago
Combining State-Based and Scenario-Based Approaches in Modeling Biological Systems
Biological systems have recently been shown to share many of the properties of reactive systems. This observation has led to the idea of using methods devised for the construction ...
Jasmin Fisher, David Harel, E. Jane Albert Hubbard...
SEMWEB
2005
Springer
13 years 10 months ago
Ontology Based Analysis of Experimental Data
We address the problem of linking observations from reality to a semantic web based knowledge base. Concepts in the biological domain are increasingly being formalized through ont...
Andrea Splendiani
16
Voted
KES
2007
Springer
13 years 11 months ago
A Hybrid Symbolic-Statistical Approach to Modeling Metabolic Networks
Biological systems consist of many components and interactions between them. In Systems Biology the principal problem is modeling complex biological systems and reconstructing inte...
Marenglen Biba, Stefano Ferilli, Nicola Di Mauro, ...
FM
2009
Springer
138views Formal Methods» more  FM 2009»
13 years 11 months ago
What Can Formal Methods Bring to Systems Biology?
This position paper argues that the operational modelling approaches from the formal methods community can be applied fruitfully within the systems biology domain. The results can ...
Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, E...