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BIRD
2008
Springer
162views Bioinformatics» more  BIRD 2008»
13 years 6 months ago
Suffix Tree Characterization of Maximal Motifs in Biological Sequences
Finding motifs in biological sequences is one of the most intriguing problems for string algorithms designers due to, on the one hand, the numerous applications of this problem in...
Maria Federico, Nadia Pisanti
BIRD
2008
Springer
131views Bioinformatics» more  BIRD 2008»
13 years 6 months ago
Identifying Subcellular Locations from Images of Unknown Resolution
Our group has previously used machine learning techniques to develop computational systems to automatically analyse fluorescence microscope images and classify the location of the ...
Luís Pedro Coelho, Robert F. Murphy
BIRD
2008
Springer
13 years 6 months ago
Efficient Seeding Techniques for Protein Similarity Search
Abstract. We apply the concept of subset seeds proposed in [1] to similarity search in protein sequences. The main question studied is the design of efficient seed alphabets to con...
Mikhail A. Roytberg, Anna Gambin, Laurent No&eacut...
BIRD
2008
Springer
177views Bioinformatics» more  BIRD 2008»
13 years 6 months ago
Fast Structured Motif Search in DNA Sequences
We study the problem of structured motif search in DNA sequences. This is a fundamental task in bioinformatics which contributes to better understanding of genome characteristics a...
Mihail Halachev, Nematollaah Shiri
BIRD
2008
Springer
113views Bioinformatics» more  BIRD 2008»
13 years 6 months ago
Matching Spatial Regions with Combinations of Interacting Gene Expression Patterns
The Edinburgh Mouse Atlas aims to capture in-situ gene expression patterns in a common spatial framework. In this study, we construct a grammar to define spatial regions by combina...
Jano I. van Hemert, Richard A. Baldock
BIRD
2008
Springer
110views Bioinformatics» more  BIRD 2008»
13 years 6 months ago
SVM-Based Local Search for Gene Selection and Classification of Microarray Data
Abstract. This paper presents a SVM-based local search (SVM-LS) approach to the problem of gene selection and classification of microarray data. The proposed approach is highlighte...
Jose Crispin Hernandez Hernandez, Béatrice ...
BIRD
2008
Springer
115views Bioinformatics» more  BIRD 2008»
13 years 6 months ago
Indexing Factors in DNA/RNA Sequences
Tomás Flouri, Costas S. Iliopoulos, Mohamma...