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BMCBI
2006
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13 years 5 months ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...
PSB
2003
13 years 6 months ago
Decomposing Gene Expression into Cellular Processes
We propose a probabilistic model for cellular processes, and an algorithm for discovering them from gene expression data. A process is associated with a set of genes that particip...
Eran Segal, Alexis Battle, Daphne Koller
PSB
2004
13 years 6 months ago
Modeling Cellular Processes with Variational Bayesian Cooperative Vector Quantizer
Gene expression of a cell is controlled by sophisticated cellular processes. The capability of inferring the states of these cellular processes would provide insight into the mech...
Xinghua Lu, Milos Hauskrecht, Roger S. Day
WSC
2007
13 years 7 months ago
Multiscale models of bacterial populations
We present a hybrid model of the interactions within (multiple-species) populations of bacteria in a developing biofilm which integrates continuum models of population processes ...
Michael Lees, Brian Logan, John King
CVPR
2006
IEEE
14 years 7 months ago
Activity Analysis in Microtubule Videos by Mixture of Hidden Markov Models
We present an automated method for the tracking and dynamics modeling of microtubules -a major component of the cytoskeleton- which provides researchers with a previously unattain...
Alphan Altinok, Motaz A. El Saban, Austin J. Peck,...