NAR
2011
12 years 8 months ago
2011
GreenPhylDB is a database designed for comparative and functional genomics based on complete genomes. Version 2 now contains sixteen full genomes of members of the plantae kingdom...
CPM
2011
Springer
12 years 8 months ago
2011
Springer
A binary matrix has the Consecutive-Ones Property (C1P) if its columns can be ordered in such a way that all 1’s in each row are consecutive. We consider here a variant of the C1...
BMCBI
2011
12 years 8 months ago
2011
Background: Orthology analysis is an important part of data analysis in many areas of bioinformatics such as comparative genomics and molecular phylogenetics. The ever-increasing ...
BMCBI
2004
13 years 4 months ago
2004
Background: A number of completely sequenced eukaryotic genome data are available in the public domain. Eukaryotic genes are either 'intron containing' or 'intronle...
BMCBI
2007
13 years 5 months ago
2007
Background: An important goal of comparative genomics is the identification of functional elements through conservation analysis. Phylo-HMM was recently introduced to detect conse...
BMCBI
2006
13 years 5 months ago
2006
Background: The estimation of the difference between two evolutionary distances within a triplet of homologs is a common operation that is used for example to determine which of t...
BMCBI
2008
13 years 5 months ago
2008
Background: Comparative genomics is the analysis and comparison of genomes from different species. This area of research is driven by the large number of sequenced genomes and hea...
IPPS
2005
IEEE
13 years 10 months ago
2005
IEEE
Many applications in Comparative Genomics lend themselves to implementations that take advantage of common high-performance features in modern microprocessors. However, the common...
IMSCCS
2006
IEEE
13 years 11 months ago
2006
IEEE
Background: As more and more genomes are sequenced, comparative genomics approaches provide a methodology for identifying conserved regulatory elements that may be involved in gen...
RECOMB
2005
Springer
14 years 5 months ago
2005
Springer
The study of genome rearrangements is an important tool in comparative genomics. This paper revisits the problem of sorting a multichromosomal genome by translocations, i.e. exchan...