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ECCC
2010
78views more  ECCC 2010»
13 years 4 months ago
PCPs and the Hardness of Generating Synthetic Data
Assuming the existence of one-way functions, we show that there is no polynomial-time, differentially private algorithm A that takes a database D ({0, 1}d )n and outputs a "...
Jonathan Ullman, Salil P. Vadhan
CORR
2008
Springer
143views Education» more  CORR 2008»
13 years 4 months ago
Join Bayes Nets: A new type of Bayes net for relational data
Many real-world data are maintained in relational format, with different tables storing information about entities and their links or relationships. The structure (schema) of the ...
Oliver Schulte, Hassan Khosravi, Flavia Moser, Mar...
CORR
2008
Springer
89views Education» more  CORR 2008»
13 years 4 months ago
Disjunctive Databases for Representing Repairs
This paper addresses the problem of representing the set of repairs of a possibly inconsistent database by means of a disjunctive database. Specifically, the class of denial constr...
Cristian Molinaro, Jan Chomicki, Jerzy Marcinkowsk...
BMCBI
2008
151views more  BMCBI 2008»
13 years 4 months ago
An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases
Background: Studies on the relationship between disease and genetic variations such as single nucleotide polymorphisms (SNPs) are important. Genetic variations can cause disease b...
Jin Ok Yang, Sohyun Hwang, Jeongsu Oh, Jong Bhak, ...
BMCBI
2008
138views more  BMCBI 2008»
13 years 4 months ago
Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data
Background: Most existing transcriptional databases like Comprehensive Systems-Biology Database (CSB.DB) and Arabidopsis Microarray Database and Analysis Toolbox (GENEVESTIGATOR) ...
Arun Rawat, Georg J. Seifert, Youping Deng
BMCBI
2008
106views more  BMCBI 2008»
13 years 4 months ago
An Integrated Korean Biodiversity and Genetic Information Retrieval System
Background: On-line biodiversity information databases are growing quickly and being integrated into general bioinformatics systems due to the advances of fast gene sequencing tec...
Jeongheui Lim, Jong Bhak, Hee-Mock Oh, Chang-Bae K...
BMCBI
2008
160views more  BMCBI 2008»
13 years 4 months ago
Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
Background: The variety of DNA microarray formats and datasets presently available offers an unprecedented opportunity to perform insightful comparisons of heterogeneous data. Cro...
Alexandre Kuhn, Ruth Luthi-Carter, Mauro Delorenzi
BMCBI
2008
75views more  BMCBI 2008»
13 years 4 months ago
Re-searcher: a system for recurrent detection of homologous protein sequences
Background: Sequence searches are routinely employed to detect and annotate related proteins. However, a rapid growth of databases necessitates a frequent repetition of sequence s...
Valdemaras Repsys, Mindaugas Margelevicius, Ceslov...
BMCBI
2008
154views more  BMCBI 2008»
13 years 4 months ago
Extension of the COG and arCOG databases by amino acid and nucleotide sequences
Background: The current versions of the COG and arCOG databases, both excellent frameworks for studies in comparative and functional genomics, do not contain the nucleotide sequen...
Florian Meereis, Michael Kaufmann
BMCBI
2008
101views more  BMCBI 2008»
13 years 4 months ago
Compressing DNA sequence databases with coil
Background: Publicly available DNA sequence databases such as GenBank are large, and are growing at an exponential rate. The sheer volume of data being dealt with presents serious...
W. Timothy J. White, Michael D. Hendy