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BMCBI
2007
200views more  BMCBI 2007»
13 years 4 months ago
BNDB - The Biochemical Network Database
Background: Technological advances in high-throughput techniques and efficient data acquisition methods have resulted in a massive amount of life science data. The data is stored ...
Jan Küntzer, Christina Backes, Torsten Blum, ...
BMCBI
2006
133views more  BMCBI 2006»
13 years 4 months ago
Web-based analysis of the mouse transcriptome using Genevestigator
Background: Gene function analysis often requires a complex and laborious sequence of laboratory and computer-based experiments. Choosing an effective experimental design generall...
Oliver Laule, Matthias Hirsch-Hoffmann, Tomas Hruz...
BMCBI
2006
136views more  BMCBI 2006»
13 years 4 months ago
Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis
Background: Recent, rapid growth in the quantity of available genomic data has generated many protein sequences that are not yet biochemically classified. Thus, the prediction of ...
Aijazuddin Syed, Chris Upton
BMCBI
2006
115views more  BMCBI 2006»
13 years 4 months ago
AgdbNet - antigen sequence database software for bacterial typing
Background: Bacterial typing schemes based on the sequences of genes encoding surface antigens require databases that provide a uniform, curated, and widely accepted nomenclature ...
Keith A. Jolley, Martin C. J. Maiden
BMCBI
2006
195views more  BMCBI 2006»
13 years 4 months ago
Hubs of knowledge: using the functional link structure in Biozon to mine for biologically significant entities
Background: Existing biological databases support a variety of queries such as keyword or definition search. However, they do not provide any measure of relevance for the instance...
Paul Shafer, Timothy Isganitis, Golan Yona
BMCBI
2006
181views more  BMCBI 2006»
13 years 4 months ago
The comprehensive updated regulatory network of Escherichia coli K-12
Background: Escherichia coli is the model organism for which our knowledge of its regulatory network is the most extensive. Over the last few years, our project has been collectin...
Heladia Salgado, Alberto Santos-Zavaleta, Socorro ...
BIB
2006
172views more  BIB 2006»
13 years 4 months ago
Advances in the Exon-Intron Database (EID)
Investigation of exon^intron gene structures is a non-trivial task due to enormous expansions of the eukaryotic genomes, great variety of gene forms, and the imperfectness in sequ...
Valery Shepelev, Alexei Fedorov
AIR
2006
124views more  AIR 2006»
13 years 4 months ago
Expressiveness of temporal query languages: on the modelling of intervals, interval relationships and states
Abstract Storing and retrieving time-related information are important, or even critical, tasks on many areas of Computer Science (CS) and in particular for Artificial Intelligence...
Rodolfo Sabás Gómez, Juan Carlos Aug...
DKE
2008
87views more  DKE 2008»
13 years 4 months ago
Region clustering based evaluation of multiple top-N selection queries
In many database applications, there are opportunities for multiple top-N queries to be evaluated at the same time. Often it is more cost effective to evaluate multiple such queri...
Liang Zhu, Weiyi Meng, Wenzhu Yang, Chunnian Liu
DATASCIENCE
2008
79views more  DATASCIENCE 2008»
13 years 4 months ago
Report from the first Workshop on Extremely Large Databases
Industrial and scientific datasets have been growing enormously in size and complexity in recent years. The largest transactional databases and data warehouses can no longer be ho...
Jacek Becla, Kian-Tat Lim