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    Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
    13 years 10 months ago
    Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
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    We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
    Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
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    ISMB
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    A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy
    13 years 10 months ago
    A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy
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    Yukako Tohsato, Hideo Matsuda, Akihiro Hashimoto
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    ISMB
    2000
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    Genomic Fold Assignment and Rational Modeling of Proteins of Biological Interest
    13 years 10 months ago
    Genomic Fold Assignment and Rational Modeling of Proteins of Biological Interest
    Download  www.aaai.org
    The first available genome of a multicellular organism, C. elegans, was used as a test case for protein fold assignment using PSI-BLAST, followed by rational structure modeling an...
    J. Michael Sauder, Roland L. Dunbrack Jr.
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    Genes, Themes, and Microarrays: Using Information Retrieval for Large-Scale Gene Analysis
    13 years 10 months ago
    Genes, Themes, and Microarrays: Using Information Retrieval for Large-Scale Gene Analysis
    Download  www.aaai.org
    The immensevolumeof data resulting from DNAmicroarray experiments, accompaniedby an increase in the numberof publications discussing gene-related discoveries, presents a majordata...
    Hagit Shatkay, Stephen Edwards, W. John Wilbur, Ma...
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    2000
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    Linear Modeling of Genetic Networks from Experimental Data
    13 years 10 months ago
    Linear Modeling of Genetic Networks from Experimental Data
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    Eugene P. van Someren, Lodewyk F. A. Wessels, Marc...
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    Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains
    13 years 10 months ago
    Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains
    Download  www.aaai.org
    Mycobacterium tuberculosis (M. tb.) strains differ in the number and locations of a transposon-like insertion sequence known as IS6110. Accurate detection of this sequence can be ...
    Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu,...
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    A Statistical Method for Finding Transcription Factor Binding Sites
    13 years 10 months ago
    A Statistical Method for Finding Transcription Factor Binding Sites
    Download  www.aaai.org
    Understanding the mechanismsthat determine the regulation of geneexpression is an important and challenging problem. A fundamental subproblem is to identify DNA-bindingsites for u...
    Saurabh Sinha, Martin Tompa
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    2000
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    A Pragmatic Information Extraction Strategy for Gathering Data on Genetic Interactions
    13 years 10 months ago
    A Pragmatic Information Extraction Strategy for Gathering Data on Genetic Interactions
    Download  www.aaai.org
    We present in this paper a pragmatic strategy to perform information extraction from biologic texts. Since the emergence of the information extraction field, techniques have evolv...
    Denys Proux, François Rechenmann, Laurent J...
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    Combinatorial Approaches to Finding Subtle Signals in DNA Sequences
    13 years 10 months ago
    Combinatorial Approaches to Finding Subtle Signals in DNA Sequences
    Download  www-ab.informatik.uni-tuebingen.de
    Signal nding pattern discovery in unaligned DNA sequences is a fundamental problem in both computer science and molecular biology with important applications in locating regulator...
    Pavel A. Pevzner, Sing-Hoi Sze
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    An Evaluation of Ontology Exchange Languages for Bioinformatics
    13 years 10 months ago
    An Evaluation of Ontology Exchange Languages for Bioinformatics
    Download  www.biomediator.org
    Ontologies are specifications of the concepts in a given field, and of the relationships among those concepts. The development of ontologies for molecular-biology information and ...
    Robin McEntire, Peter D. Karp, Neil F. Abernethy, ...
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