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FOSSACS
2011
Springer
12 years 8 months ago
A Practical Linear Time Algorithm for Trivial Automata Model Checking of Higher-Order Recursion Schemes
The model checking of higher-order recursion schemes has been actively studied and is now becoming a basis of higher-order program verification. We propose a new algorithm for tri...
Naoki Kobayashi
WABI
2010
Springer
160views Bioinformatics» more  WABI 2010»
13 years 2 months ago
Genomic Distance with DCJ and Indels
The double cut and join (DCJ) operation, introduced by Yancopoulos, Attie and Friedberg in 2005, allows one to represent most rearrangement events in genomes. However, a DCJ cannot...
Marília D. V. Braga, Eyla Willing, Jens Sto...
IJCAI
2003
13 years 5 months ago
Multiset Ordering Constraints
We identify a new and important global (or nonbinary) constraint which ensures that the values taken by two vectors of variables, when viewed as multisets, are ordered. This const...
Alan M. Frisch, Ian Miguel, Zeynep Kiziltan, Brahi...
COMPGEOM
2005
ACM
13 years 6 months ago
Fast construction of nets in low dimensional metrics, and their applications
We present a near linear time algorithm for constructing hierarchical nets in finite metric spaces with constant doubling dimension. This data-structure is then applied to obtain...
Sariel Har-Peled, Manor Mendel
ICALP
1995
Springer
13 years 8 months ago
Intervalizing k-Colored Graphs
The problem to determine whether a given k-colored graph is a subgraph of a properly colored interval graph has an application in DNA physical mapping. In this paper, we study the...
Hans L. Bodlaender, Babette de Fluiter
GD
2006
Springer
13 years 8 months ago
Planarity Testing and Optimal Edge Insertion with Embedding Constraints
The planarization method has proven to be successful in graph drawing. The output, a combinatorial planar embedding of the so-called planarized graph, can be combined with state-o...
Carsten Gutwenger, Karsten Klein, Petra Mutzel
ICALP
1997
Springer
13 years 8 months ago
Constructive Linear Time Algorithms for Branchwidth
We prove that, for any fixed k, one can construct a linear time algorithm that checks if a graph has branchwidth≤ k and, if so, outputs a branch decomposition of minimum width....
Hans L. Bodlaender, Dimitrios M. Thilikos
WADS
2001
Springer
124views Algorithms» more  WADS 2001»
13 years 9 months ago
Deciding Clique-Width for Graphs of Bounded Tree-Width
We show that there exists a linear time algorithm for deciding whether a graph of bounded tree-width has clique-width k for some fixed integer k. Communicated by Giuseppe Liotta ...
Wolfgang Espelage, Frank Gurski, Egon Wanke
SWAT
2004
Springer
123views Algorithms» more  SWAT 2004»
13 years 10 months ago
A Simple Linear-Time Modular Decomposition Algorithm for Graphs, Using Order Extension
The first polynomial time algorithm (O(n4 )) for modular decomposition appeared in 1972 [8] and since then there have been incremental improvements, eventually resulting in linear...
Michel Habib, Fabien de Montgolfier, Christophe Pa...
WABI
2005
Springer
107views Bioinformatics» more  WABI 2005»
13 years 10 months ago
Linear Time Algorithm for Parsing RNA Secondary Structure
Abstract Baharak Rastegari and Anne Condon Department of Computer Science, University of British Columbia Abstract. Accurate prediction of pseudoknotted RNA secondary structure is ...
Baharak Rastegari, Anne Condon