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11 years 1 months ago
A Structural Approach to Sensor Placement based on Symbolic Compilation of the Model
: In the present paper we address the problem of computing the Minimal Additional Sensor Sets (MASS) that guarantee a desired level of diagnostic discrimination for a system. Recen...
Gianluca Torta, Pietro Torasso
135views Data Mining» more  SISAP 2010»
11 years 4 months ago
Improving the similarity search of tandem mass spectra using metric access methods
In biological applications, the tandem mass spectrometry is a widely used method for determining protein and peptide sequences from an ”in vitro” sample. The sequences are not...
Jiri Novák, Tomás Skopal, David Hoks...
159views more  BMCBI 2004»
11 years 6 months ago
Extractor for ESI quadrupole TOF tandem MS data enabled for high throughput batch processing
Background: Mass spectrometry based proteomics result in huge amounts of data that has to be processed in real time in order to efficiently feed identification algorithms and to e...
Andreas M. Boehm, Robert P. Galvin, Albert Sickman...
128views more  BMCBI 2005»
11 years 6 months ago
Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process
Background: Biological Mass Spectrometry is used to analyse peptides and proteins. A mass spectrum generates a list of measured mass to charge ratios and intensities of ionised pe...
Witold E. Wolski, Maciej Lalowski, Peter Martus, R...
91views more  JCB 2008»
11 years 6 months ago
Computational Quantification of Peptides from LC-MS Data
Liquid chromatography coupled to mass spectrometry (LC-MS) has become a major tool for the study of biological processes. High-throughput LC-MS experiments are frequently conducte...
Ole Schulz-Trieglaff, Rene Hussong, Clemens Gr&oum...
86views more  BMCBI 2007»
11 years 6 months ago
Tandem mass spectrometry data quality assessment by self-convolution
Background: Many algorithms have been developed for deciphering the tandem mass spectrometry (MS) data sets. They can be essentially clustered into two classes. The first performs...
Keng Wah Choo, Wai Mun Tham
149views more  BMCBI 2007»
11 years 6 months ago
SAMPI: Protein Identification with Mass Spectra Alignments
Background: Mass spectrometry based peptide mass fingerprints (PMFs) offer a fast, efficient, and robust method for protein identification. A protein is digested (usually by tryps...
Hans-Michael Kaltenbach, Andreas Wilke, Sebastian ...
166views more  BMCBI 2010»
11 years 6 months ago
Accurate peak list extraction from proteomic mass spectra for identification and profiling studies
Background: Mass spectrometry is an essential technique in proteomics both to identify the proteins of a biological sample and to compare proteomic profiles of different samples. ...
Nicola Barbarini, Paolo Magni
91views more  BMCBI 2007»
11 years 6 months ago
A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data
Background: Liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS) has become one of the most used tools in mass spectrometry based proteomics. Various algorithms ...
Hua Xu, Michael A. Freitas
161views Data Mining» more  KDD 2010»
11 years 8 months ago
Mass estimation and its applications
This paper introduces mass estimation—a base modelling mechanism in data mining. It provides the theoretical basis of mass and an efficient method to estimate mass. We show that...
Kai Ming Ting, Guang-Tong Zhou, Fei Tony Liu, Jame...