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JCC
2007
88views more  JCC 2007»
8 years 5 months ago
Recent advances in planar tetracoordinate carbon chemistry
: We summarize our contributions on the quest of new planar tetracoordinate carbon entities (new carbon molecules with exotic chemical structures and strange bonding schemes). We g...
Gabriel Merino, Miguel A. Méndez-Rojas, Alb...
JCB
2007
94views more  JCB 2007»
8 years 5 months ago
A Quantile Method for Sizing Optical Maps
Optical mapping is an integrated system for the analysis of single DNA molecules. It constructs restriction maps (noted as “optical map”) from individual DNA molecules present...
Haifeng Li, Anton Valouev, David C. Schwartz, Mich...
BMCBI
2008
85views more  BMCBI 2008»
8 years 5 months ago
Wanted: unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing dip
Background: Biological chemistry is very stereospecific. Nonetheless, the diastereotopic oxygen atoms of diphosphate-containing molecules in the Protein Data Bank (PDB) are often ...
Christopher A. Bottoms, Dong Xu
BMCBI
2007
143views more  BMCBI 2007»
8 years 5 months ago
RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules
Background: In recent years, RNA molecules that are not translated into proteins (ncRNAs) have drawn a great deal of attention, as they were shown to be involved in many cellular ...
Yair Horesh, Tirza Doniger, Shulamit Michaeli, Ron...
BMCBI
2010
103views more  BMCBI 2010»
8 years 5 months ago
Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of Mycobacterium tuberculosis
Background: An explosive global spreading of multidrug resistant Mycobacterium tuberculosis (Mtb) is a catastrophe, which demands an urgent need to design or develop novel/potent ...
Aarti Garg, Rupinder Tewari, Gajendra P. S. Raghav...
APVIS
2009
8 years 6 months ago
Visualization of signal transduction processes in the crowded environment of the cell
In this paper, we propose a stochastic simulation to model and analyze cellular signal transduction. The high number of objects in a simulation requires advanced visualization tec...
Martin Falk, Michael Klann, Matthias Reuss, Thomas...
GECCO
2000
Springer
200views Optimization» more  GECCO 2000»
8 years 8 months ago
Chemical Crossover
During chemical reactions, molecules interact to produce new molecules. Some of the reaction mechanisms are very close to the way gene combine to produce new genes. Like the class...
Hugues Bersini
GCB
2006
Springer
136views Biometrics» more  GCB 2006»
8 years 9 months ago
Ab Initio Prediction of Molecular Fragments from Tandem Mass Spectrometry Data
: Mass spectrometry is one of the key enabling measurement technologies for systems biology, due to its ability to quantify molecules in small concentrations. Tandem mass spectrome...
Markus Heinonen, Ari Rantanen, Taneli Mielikä...
BIBE
2007
IEEE
149views Bioinformatics» more  BIBE 2007»
8 years 9 months ago
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes
Multi-state molecules and multi-component complexes are commonly involved in cellular signaling. Accounting for molecules that have multiple potential states, such as a protein tha...
Michael L. Blinov, Ion I. Moraru
ICRA
1998
IEEE
110views Robotics» more  ICRA 1998»
8 years 9 months ago
The Self-Reconfiguring Robotic Molecule
We discuss a robotic module called a Molecule. Molecules can be the basis for building selfreconfiguring robots. They support multiple modalities of locomotion and manipulation. W...
Keith Kotay, Daniela Rus, Marsette Vona, Craig D. ...
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