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NAR
2011
162views Computer Vision» more  NAR 2011»
12 years 7 months ago
BSDB: the biomolecule stretching database
We describe the Biomolecule Stretching Data Base that has been recently set up at http://www.ifpan .edu.pl/BSDB/. It provides information about mechanostability of proteins. Its c...
Mateusz Sikora, Joanna I. Sulkowska, Bartlomiej S....
NAR
2011
193views Computer Vision» more  NAR 2011»
12 years 7 months ago
AREsite: a database for the comprehensive investigation of AU-rich elements
AREsite is an online resource for the detailed investigation of AU-rich elements (ARE) in vertebrate mRNA 30 -untranslated regions (UTRs). AREs are one of the most prominent cis-a...
Andreas R. Gruber, Jörg Fallmann, Franz Krato...
NAR
2011
199views Computer Vision» more  NAR 2011»
12 years 7 months ago
RepTar: a database of predicted cellular targets of host and viral miRNAs
Computational identification of putative microRNA (miRNA) targets is an important step towards elucidating miRNA functions. Several miRNA target-prediction algorithms have been de...
Naama Elefant, Amnon Berger, Harel Shein, Matan Ho...
NAR
2011
248views Computer Vision» more  NAR 2011»
12 years 7 months ago
NCBI GEO: archive for functional genomics data sets - 10 years on
A decade ago, the Gene Expression Omnibus (GEO) database was established at the National Center for Biotechnology Information (NCBI). The original objective of GEO was to serve as...
Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite...
NAR
2011
225views Computer Vision» more  NAR 2011»
12 years 7 months ago
PHOSIDA 2011: the posttranslational modification database
The primary purpose of PHOSIDA (http://www .phosida.com) is to manage posttranslational modification sites of various species ranging from bacteria to human. Since its last report...
Florian Gnad, Jeremy Gunawardena, Matthias Mann 00...
NAR
2011
219views Computer Vision» more  NAR 2011»
12 years 7 months ago
SCLD: a stem cell lineage database for the annotation of cell types and developmental lineages
Stem cell biology has experienced explosive growth over the past decade as researchers attempt to generate therapeutically relevant cell types in the laboratory. Recapitulation of...
Edward Hemphill, Asav P. Dharia, Chih Lee, Carolin...
NAR
2011
208views Computer Vision» more  NAR 2011»
12 years 7 months ago
MIPS: curated databases and comprehensive secondary data resources in 2010
The Munich Information Center for Protein Sequences (MIPS at the Helmholtz Center for Environmental Health, Neuherberg, Germany) has many years of experience in providing annotate...
Hans-Werner Mewes, Andreas Ruepp, Fabian J. Theis,...
NAR
2011
256views Computer Vision» more  NAR 2011»
12 years 7 months ago
ModBase, a database of annotated comparative protein structure models, and associated resources
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that rel...
Ursula Pieper, Benjamin M. Webb, David T. Barkan, ...
NAR
2011
234views Computer Vision» more  NAR 2011»
12 years 7 months ago
The UCSC cancer genomics browser: update 2011
The UCSC Cancer Genomics Browser (https:// genome-cancer.ucsc.edu) comprises a suite of web-based tools to integrate, visualize and analyze cancer genomics and clinical data. The ...
J. Zachary Sanborn, Stephen C. Benz, Brian Craft, ...