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SCFBM
2008
148views more  SCFBM 2008»
9 years 11 months ago
Flow: Statistics, visualization and informatics for flow cytometry
Flow is an open source software application for clinical and experimental researchers to perform exploratory data analysis, clustering and annotation of flow cytometric data. Flow...
Jacob Frelinger, Thomas B. Kepler, Cliburn Chan
SCFBM
2008
91views more  SCFBM 2008»
9 years 11 months ago
Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data
Background: The advent of pyrophosphate sequencing makes large volumes of sequencing data available at a lower cost than previously possible. However, the short read lengths are d...
Nicolas J. Parker, Andrew G. Parker
SCFBM
2008
107views more  SCFBM 2008»
9 years 11 months ago
Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis
Background: Microarrays are becoming a very popular tool for microbial detection and diagnostics. Although these diagnostic arrays are much simpler when compared to the traditiona...
Joy Scaria, Aswathy Sreedharan, Yung-Fu Chang
SCFBM
2008
151views more  SCFBM 2008»
9 years 11 months ago
Wndchrm - an open source utility for biological image analysis
Background: Biological imaging is an emerging field, covering a wide range of applications in biological and clinical research. However, while machinery for automated experimentin...
Lior Shamir, Nikita Orlov, D. Mark Eckley, Tomasz ...
SCFBM
2008
143views more  SCFBM 2008»
9 years 11 months ago
LSID Tester, a tool for testing Life Science Identifier resolution services
Background: Life Science Identifiers (LSIDs) are persistent, globally unique identifiers for biological objects. The decentralised nature of LSIDs makes them attractive for identi...
Roderic D. M. Page
SCFBM
2008
131views more  SCFBM 2008»
9 years 11 months ago
FASH: A web application for nucleotides sequence search
: FASH (Fourier Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid sequence. Given a ...
Isana Veksler-Lublinsky, Danny Barash, Chai Avisar...
SCFBM
2008
87views more  SCFBM 2008»
9 years 11 months ago
Analysis by siRNA_profile program displays novel thermodynamic characteristics of highly functional siRNA molecules
Objective: Here we report the improved results of a new siRNA design program and analysis tool called siRNA_profile that reveals an additional criterion for bioinformatic search o...
Pirkko Muhonen, Ranga N. Parthasarathy, Anthony J....
SCFBM
2008
92views more  SCFBM 2008»
9 years 11 months ago
CRANKITE: A fast polypeptide backbone conformation sampler
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...
Alexei A. Podtelezhnikov, David L. Wild
SCFBM
2008
129views more  SCFBM 2008»
9 years 11 months ago
Faunus: An object oriented framework for molecular simulation
Background: We present a C++ class library for Monte Carlo simulation of molecular systems, including proteins in solution. The design is generic and highly modular, enabling mult...
Mikael Lund, Martin Trulsson, Björn Persson
SCFBM
2008
119views more  SCFBM 2008»
9 years 11 months ago
OSPACS: Ultrasound image management system
Background: Ultrasound scanning uses the medical imaging format, DICOM, for electronically storing the images and data associated with a particular scan. Large health care facilit...
Will Stott, Andy Ryan, Ian J. Jacobs, Usha Menon, ...
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