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BCB
2010
156views Bioinformatics» more  BCB 2010»
12 years 11 months ago
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism
Many biologically motivated problems are expressed as dynamic programming recurrences and are difficult to parallelize due to the intrinsic data dependencies in their algorithms. ...
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhl...
ISPAN
2005
IEEE
13 years 10 months ago
Dynamic Estimation of Task Level Parallelism with Operating System Support
The amount of Task Level Parallelism (TLP) in runtime workload is useful information to determine the efficient usage of multiprocessors. This paper presents mechanisms to dynami...
Luong Dinh Hung, Shuichi Sakai