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DAM
2010
101views more  DAM 2010»
8 years 8 months ago
On the distribution of distances between specified nodes in increasing trees
We study the quantity distance between node j and node n in a random tree of size n for increasing tree families. We give closed formul
Markus Kuba, Alois Panholzer
CORR
2010
Springer
125views Education» more  CORR 2010»
8 years 8 months ago
Tree Languages Defined in First-Order Logic with One Quantifier Alternation
We study tree languages that can be defined in 2. These are tree languages definable by a first-order formula whose quantifier prefix is , and simultaneously by a first-order for...
Mikolaj Bojanczyk, Luc Segoufin
CORR
2010
Springer
174views Education» more  CORR 2010»
8 years 8 months ago
Gaussian Process Bandits for Tree Search
We motivate and analyse a new Tree Search algorithm, based on recent advances in the use of Gaussian Processes for bandit problems. We assume that the function to maximise on the ...
Louis Dorard, John Shawe-Taylor
COMCOM
2010
276views more  COMCOM 2010»
8 years 8 months ago
Adjustable convergecast tree protocol for wireless sensor networks
For data-collection applications in sensor networks, it is important to ensure base station receives a complete picture about the monitored area. Convergecast is an important commu...
Tzung-Shi Chen, Hua-Wen Tsai, Chih-Ping Chu
CGF
2010
168views more  CGF 2010»
8 years 8 months ago
Modeling Complex Unfoliaged Trees from a Sparse Set of Images
We present a novel image-based technique for modeling complex unfoliaged trees. Existing tree modeling tools either require capturing a large number of views for dense 3D reconstr...
Luis D. Lopez, Yuanyuan Ding, Jingyi Yu
BMCBI
2007
116views more  BMCBI 2007»
8 years 8 months ago
primetv: a viewer for reconciled trees
Background: Evolutionary processes, such as gene family evolution or parasite-host cospeciation, can often be viewed as a tree evolving inside another tree. Relating two given tre...
Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglun...
BMCBI
2007
162views more  BMCBI 2007»
8 years 8 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee
BMCBI
2010
118views more  BMCBI 2010»
8 years 8 months ago
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
Background: To understand the evolutionary role of Lateral Gene Transfer (LGT), accurate methods are needed to identify transferred genes and infer their timing of acquisition. Ph...
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent...
BMCBI
2010
137views more  BMCBI 2010»
8 years 8 months ago
TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses
Background: Today it is common to apply multiple potentially conflicting data sources to a given phylogenetic problem. At the same time, several different inference techniques are...
Ben C. Stöver, Kai F. Müller
BMCBI
2010
143views more  BMCBI 2010»
8 years 8 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
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