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    WABI
    2007
    Springer
    96views Bioinformatics» more  WABI 2007»
    Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity
    13 years 11 months ago
    Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity
    Download  www.brown.edu
    Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
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    WABI
    2007
    Springer
    110views Bioinformatics» more  WABI 2007»
    Haplotype Inference Via Hierarchical Genotype Parsing
    13 years 11 months ago
    Haplotype Inference Via Hierarchical Genotype Parsing
    Download  www.cs.helsinki.fi
    The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
    Pasi Rastas, Esko Ukkonen
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    WABI
    2007
    Springer
    157views Bioinformatics» more  WABI 2007»
    Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation
    13 years 11 months ago
    Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation
    Download  www.comp.nus.edu.sg
    Abstract. Parameter estimation of large bio-pathway models is an important and difficult problem. To reduce the prohibitive computational cost, one approach is to decompose a large...
    Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S...
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    WABI
    2007
    Springer
    83views Bioinformatics» more  WABI 2007»
    Bringing Folding Pathways into Strand Pairing Prediction
    13 years 11 months ago
    Bringing Folding Pathways into Strand Pairing Prediction
    Download  www.cse.psu.edu
    Abstract. The topology of β-sheets is defined by the pattern of hydrogenbonded strand pairing. Therefore, predicting hydrogen bonded strand partners is a fundamental step towards...
    Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka
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    WABI
    2007
    Springer
    99views Bioinformatics» more  WABI 2007»
    HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding
    13 years 11 months ago
    HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding
    Download  www.stanford.edu
    Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop,...
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    WABI
    2007
    Springer
    102views Bioinformatics» more  WABI 2007»
    Homology Search with Fragmented Nucleic Acid Sequence Patterns
    13 years 11 months ago
    Homology Search with Fragmented Nucleic Acid Sequence Patterns
    Download  www.bioinf.uni-leipzig.de
    The comprehensive annotation of non-coding RNAs in newly sequenced genomes is still a largely unsolved problem because many functional RNAs exhibit not only poorly conserved sequen...
    Axel Mosig, Julian J.-L. Chen, Peter F. Stadler
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    WABI
    2007
    Springer
    121views Bioinformatics» more  WABI 2007»
    Seeded Tree Alignment and Planar Tanglegram Layout
    13 years 11 months ago
    Seeded Tree Alignment and Planar Tanglegram Layout
    Download  www.lsi.upc.edu
    The optimal transformation of one tree into another by means of elementary edit operations is an important algorithmic problem that has several interesting applications to computat...
    Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabr...
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    WABI
    2007
    Springer
    82views Bioinformatics» more  WABI 2007»
    Shotgun Protein Sequencing
    13 years 11 months ago
    Shotgun Protein Sequencing
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    Although snake venom proteins have been proven instrumental in the design of blood clotting and cytostatic breast cancer drugs, the main method in use to sequence these unknown pr...
    Pavel A. Pevzner
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    WABI
    2007
    Springer
    133views Bioinformatics» more  WABI 2007»
    RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound
    13 years 11 months ago
    RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound
    Download  www.engr.uconn.edu
    Predicting the secondary structure of an RNA sequence is an important problem in structural bioinformatics. The general RNA folding problem, where the sequence to be folded may con...
    Chunmei Liu, Yinglei Song, Louis W. Shapiro
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    WABI
    2007
    Springer
    102views Bioinformatics» more  WABI 2007»
    On-Line Viterbi Algorithm for Analysis of Long Biological Sequences
    13 years 11 months ago
    On-Line Viterbi Algorithm for Analysis of Long Biological Sequences
    Download  www.ti.inf.ethz.ch
    Rastislav Srámek, Brona Brejová, Tom...
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