Predictors of natively unfolded proteins: unanimous consensus score to detect a twilight zone between order and disorder in gene

Background: Natively unfolded proteins lack a well defined three dimensional structure but have important biological functions, suggesting a re-assignment of the structure-function paradigm. To assess that a given protein is natively unfolded requires laborious experimental investigations, then reliable sequence-only methods for predicting whether a sequence corresponds to a folded or to an unfolded protein are of interest in fundamental and applicative studies. Many proteins have amino acidic compositions compatible both with the folded and unfolded status, and belong to a twilight zone between order and disorder. This makes difficult a dichotomic classification of protein sequences into folded and natively unfolded ones. In this work we propose an operational method to identify proteins belonging to the twilight zone by combining into a consensus score good performing single predictors of folding. Results: In this methodological paper dichotomic folding indexes are considered: hydro...

• Type: Journal
• Year: 2010
• Where: BMCBI
• Authors: Antonio Deiana, Andrea Giansanti
• Keywords: Acidic Compositions, BMCBI 2010, Proteins, Unfolded Protein