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CMSB
2004
Springer
13 years 10 months ago
Developing SBML Beyond Level 2: Proposals for Development
Abstract. The Systems Biology Markup Language (SBML) is an XMLbased exchange format for computational models of biochemical networks. SBML Level 2, whose definition was establishe...
Andrew Finney
CMSB
2004
Springer
13 years 10 months ago
Combining State-Based and Scenario-Based Approaches in Modeling Biological Systems
Biological systems have recently been shown to share many of the properties of reactive systems. This observation has led to the idea of using methods devised for the construction ...
Jasmin Fisher, David Harel, E. Jane Albert Hubbard...
CMSB
2004
Springer
13 years 9 months ago
Residual Bootstrapping and Median Filtering for Robust Estimation of Gene Networks from Microarray Data
We propose a robust estimation method of gene networks based on microarray gene expression data. It is well-known that microarray data contain a large amount of noise and some outl...
Seiya Imoto, Tomoyuki Higuchi, SunYong Kim, Euna J...
CMSB
2004
Springer
13 years 10 months ago
Projective Brane Calculus
A refinement of Cardelli’s brane calculus [1] is introduced where membrane actions are directed. This modification brings the language closer to biological membranes and also o...
Vincent Danos, Sylvain Pradalier
CMSB
2004
Springer
13 years 10 months ago
Beta Binders for Biological Interactions
This paper presents binders and operators, in the process calculi tradition, to reason about biological interactions. Special binders are added to wrap a process just as membranes ...
Corrado Priami, Paola Quaglia
Applied Computing
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