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GCB
2004
Springer
139views Biometrics» more  GCB 2004»
13 years 10 months ago
Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active Sites
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
Nils Weskamp, Eyke Hüllermeier, Daniel Kuhn, ...
GCB
2004
Springer
223views Biometrics» more  GCB 2004»
13 years 9 months ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
GCB
2004
Springer
81views Biometrics» more  GCB 2004»
13 years 10 months ago
GoPubMed: ontology-based literature search applied to Gene Ontology and PubMed
Abstract. The biomedical literature grows at a tremendous rate, so that finding the relevant literature is becoming more and more difficult. To address this problem we introduce ...
Ralph Delfs, Andreas Doms, Alexander Kozlenkov, Mi...
GCB
2004
Springer
101views Biometrics» more  GCB 2004»
13 years 10 months ago
Kleene's Theorem and the Solution of Metabolic Carbon Labeling Systems
: Carbon Labeling Systems (CLS) are large equation systems that describe the dynamics of labeled carbon atoms in a metabolic network. The rapid solution of these systems is the alg...
Nicole Isermann, Michael Weitzel, Wolfgang Wiecher...
GCB
2004
Springer
126views Biometrics» more  GCB 2004»
13 years 10 months ago
Proteochemometrics Modeling of Receptor-Ligand Interactions Using Rough Sets
Abstract: We report on a model for the interaction of chimeric melanocortin Gprotein coupled receptors with peptide ligands using the rough set approach. Rough sets generate If-The...
H. Strömbergsson, Peteris Prusis, Herman Mide...
Biometrics
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