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BMCBI
2011
13 years 24 days ago
Implementation of Force Distribution Analysis for Molecular Dynamics simulations
Background: The way mechanical stress is distributed inside and propagated by proteins and other biopolymers largely defines their function. Yet, determining the network of intera...
Wolfram Stacklies, Christian Seifert, Frauke Graet...
ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
14 years 2 days ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...
ICARCV
2006
IEEE
137views Robotics» more  ICARCV 2006»
13 years 12 months ago
Nanorobot Communication Techniques: A Comprehensive Tutorial
—This work presents chemical communication techniques for nanorobots foraging in fluid environments relevant for medical applications. Unlike larger robots, viscous forces and ra...
Adriano Cavalcanti, Tad Hogg, Bijan Shirinzadeh, H...
DNA
2009
Springer
158views Bioinformatics» more  DNA 2009»
14 years 10 days ago
Design of a Biomolecular Device That Executes Process Algebra
Process algebras are widely used for defining the formal semantics of concurrent communicating processes. In process algebra, concurrent processes can be specified to execute di...
Urmi Majumder, John H. Reif
FCCM
2006
IEEE
133views VLSI» more  FCCM 2006»
13 years 12 months ago
A Scalable FPGA-based Multiprocessor
It has been shown that a small number of FPGAs can significantly accelerate certain computing tasks by up to two or three orders of magnitude. However, particularly intensive lar...
Arun Patel, Christopher A. Madill, Manuel Salda&nt...