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EVOW
2009
Springer
10 years 2 months ago
A Hierarchical Classification Ant Colony Algorithm for Predicting Gene Ontology Terms
Abstract. This paper proposes a novel Ant Colony Optimisation algorithm for the hierarchical problem of predicting protein functions using the Gene Ontology (GO). The GO structure ...
Fernando E. B. Otero, Alex Alves Freitas, Colin G....
JBCB
2010
138views more  JBCB 2010»
9 years 5 months ago
Hierarchical Classification of Gene Ontology Terms Using the Gostruct Method
Protein function prediction is an active area of research in bioinformatics. And yet, transfer of annotation on the basis of sequence or structural similarity remains widely used ...
Artem Sokolov, Asa Ben-Hur
GECCO
2006
Springer
159views Optimization» more  GECCO 2006»
10 years 2 months ago
A new version of the ant-miner algorithm discovering unordered rule sets
The Ant-Miner algorithm, first proposed by Parpinelli and colleagues, applies an ant colony optimization heuristic to the classification task of data mining to discover an ordered...
James Smaldon, Alex Alves Freitas
BMCBI
2004
229views more  BMCBI 2004»
9 years 10 months ago
Automatic annotation of protein motif function with Gene Ontology terms
Background: Conserved protein sequence motifs are short stretches of amino acid sequence patterns that potentially encode the function of proteins. Several sequence pattern search...
Xinghua Lu, Chengxiang Zhai, Vanathi Gopalakrishna...
BIBM
2008
IEEE
217views Bioinformatics» more  BIBM 2008»
10 years 5 months ago
Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction
The study of gene function is critical in various genomic and proteomic fields. Due to the availability of tremendous amounts of different types of protein data, integrating thes...
Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon ...
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