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TVLSI
2008
90views more  TVLSI 2008»
13 years 4 months ago
A Special-Purpose Architecture for Solving the Breakpoint Median Problem
Abstract--In this paper, we describe the design for a co-processor for whole-genome phylogenetic reconstruction. Our current design performs a parallelized breakpoint median comput...
Jason D. Bakos, Panormitis E. Elenis
TCOS
2010
12 years 11 months ago
PET SNAKE: A Special Purpose Architecture to Implement an Algebraic Attack in Hardware
Abstract. In [24] Raddum and Semaev propose a technique to solve systems of polynomial equations over F2 as occurring in algebraic attacks on block ciphers. This approach is known ...
Willi Geiselmann, Kenneth Matheis, Rainer Steinwan...
IPPS
2003
IEEE
13 years 10 months ago
PROSIDIS: A Special Purpose Processor for PROtein SImilarity DIScovery
This work presents the architecture of PROSIDIS, a special purpose processor designed to search for the occurrence of substrings similar to a given ‘template string’ within a ...
Alessandro Marongiu, Paolo Palazzari, Vittorio Ros...
ASAP
2010
IEEE
128views Hardware» more  ASAP 2010»
13 years 6 months ago
An optimized NoC architecture for accelerating TSP kernels in breakpoint median problem
Turbo Majumder, Souradip Sarkar, Partha Pande, Ana...
JDA
2007
156views more  JDA 2007»
13 years 4 months ago
A linear time algorithm for the inversion median problem in circular bacterial genomes
In the median problem, we are given a distance or dissimilarity measure d, three genomes G1, G2, and G3, and we want to find a genome G (a median) such that the sum 3 i=1 d(G, Gi...
Enno Ohlebusch, Mohamed Ibrahim Abouelhoda, Kathri...