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» Agent-Oriented Data Curation in Bioinformatics
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BMCBI
2007
165views more  BMCBI 2007»
13 years 6 months ago
Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
Background: Manual curation of biological databases, an expensive and labor-intensive process, is essential for high quality integrated data. In this paper we report the implement...
Carlos Rodríguez Penagos, Heladia Salgado, ...
PRIB
2009
Springer
187views Bioinformatics» more  PRIB 2009»
13 years 10 months ago
Semi-supervised Prediction of Protein Interaction Sentences Exploiting Semantically Encoded Metrics
Protein-protein interaction (PPI) identification is an integral component of many biomedical research and database curation tools. Automation of this task through classification ...
Tamara Polajnar, Mark A. Girolami
BMCBI
2006
114views more  BMCBI 2006»
13 years 6 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
NAR
2007
99views more  NAR 2007»
13 years 5 months ago
PATRIC: The VBI PathoSystems Resource Integration Center
The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infection Diseases (NI...
E. E. Snyder, N. Kampanya, J. Lu, Eric K. Nordberg...
BIRD
2007
Springer
112views Bioinformatics» more  BIRD 2007»
14 years 6 days ago
Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server
An online protein interaction server has been designed and implemented to make predictions for 256 nonhomologous protein-protein interaction sites using patch analysis. Predictions...
Susan Jones, Yoichi Mukarami