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BMCBI
2006
111views more  BMCBI 2006»
13 years 5 months ago
Using ESTs to improve the accuracy of de novo gene prediction
Background: ESTs are a tremendous resource for determining the exon-intron structures of genes, but even extensive EST sequencing tends to leave many exons and genes untouched. Ge...
Chaochun Wei, Michael R. Brent
CSB
2005
IEEE
110views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Maximum Sequence Alignment Fails to Predict Off-targeted Gene Regulation by RNAi
We have employed various sequence alignment algorithms and scoring techniques to determine whether current computational tools accurately predict genes that will be off-targeted b...
Amanda Birmingham, Emily M. Anderson, William S. M...
BIBM
2009
IEEE
118views Bioinformatics» more  BIBM 2009»
13 years 9 months ago
Inexact Local Alignment Search over Suffix Arrays
We describe an algorithm for finding approximate seeds for DNA homology searches. In contrast to previous algorithms that use exact or spaced seeds, our approximate seeds may conta...
Mohammadreza Ghodsi, Mihai Pop
ICDAR
2011
IEEE
12 years 5 months ago
HMM-Based Alignment of Inaccurate Transcriptions for Historical Documents
—For historical documents, available transcriptions typically are inaccurate when compared with the scanned document images. Not only the position of the words and sentences are ...
Andreas Fischer, Emanuel Indermühle, Volkmar ...
ACL
2003
13 years 7 months ago
Reliable Measures for Aligning Japanese-English News Articles and Sentences
We have aligned Japanese and English news articles and sentences to make a large parallel corpus. We first used a method based on cross-language information retrieval (CLIR) to a...
Masao Utiyama, Hitoshi Isahara